Publications
Latest publications
2026 |
preprint
Emergent contagion complexity: Disentangling mechanistic complexity from correlated heterogeneity
K. Tang, D. Kaiser,
,
,
, and
2026 |
preprint
Dynastic dynamics: Modelling powerful naming choices with stochastic prestige
P. Rosillo-Rodes, S. Lamata-Otín, D. Soriano-Paños,
, and P. S. Dodds
2026 |
article
Taste for Privacy: How Context, Identity, and Lived-Experience Shape Information Sharing Preferences
J. Lovato,
, M. Ghasemizade,
, P. S. Dodds, L. Bloomfield, M. I. Fudolig, M. Price, and C. Danforth
ACM Conference on Fairness, Accountability, and Transparency (FAccT 2026)
2026 |
preprint
Artificial collectives of specialists and generalists excel at different tasks
,
, C. Riedl, and H. O. Gao
184 results
2026 |
preprint
Emergent contagion complexity: Disentangling mechanistic complexity from correlated heterogeneity
K. Tang, D. Kaiser,
,
,
, and
2026 |
preprint
Dynastic dynamics: Modelling powerful naming choices with stochastic prestige
P. Rosillo-Rodes, S. Lamata-Otín, D. Soriano-Paños,
, and P. S. Dodds
2026 |
article
Taste for Privacy: How Context, Identity, and Lived-Experience Shape Information Sharing Preferences
J. Lovato,
, M. Ghasemizade,
, P. S. Dodds, L. Bloomfield, M. I. Fudolig, M. Price, and C. Danforth
ACM Conference on Fairness, Accountability, and Transparency (FAccT 2026)
2026 |
preprint
Artificial collectives of specialists and generalists excel at different tasks
,
, C. Riedl, and H. O. Gao
2026 |
article
Inferring signed social networks from contact patterns
D. Ferenczi,
, and L. Peel
J. Phys. Complex. 7 025018
2026 |
preprint
The impact of behavioral homophily and conformity on epidemic spreading in networks with large groups
O. Ribordy, C. Granell,
,
, A. Arenas, and A. Allard
2026 |
preprint
The nestedness of higher-order networks
T. LaRock, Y. Zhang,
, N. Eikmeier, R. Lambiotte, and
2026 |
preprint
Centering human cognition in epidemiological models
B. Beckage, L. J. Gross, A. Freedman,
, K. Lacasse, S. Lenhart, C. M. Saad-Roy, and C. Sims
2026 |
article
Biomedical open source software: crucial packages and hidden heroes
A. Nesbitt, B. Veytsman, D. Mietchen, E. M. Brown, J. Howison, J. F. Pimentel,
, and S. Druskat
PLOS Comput. Biol. 22(5): e1014260
2026 |
preprint
Simpson's paradox explains the ubiquity of nonlinear, threshold, and complex contagions
, A. Allard,
,
, and
2026 |
preprint
Simon's model does not produce Zipf's law: The fundamental rich-get-richer mechanism for any power-law size ranking
P. Rosillo-Rodes, J. Witte Zimmerman,
, and P. S. Dodds
2026 |
article
Ethical Frameworks for Conducting Social Challenge Studies
P. Sen,
, P. Bose, and J. Lovato
Journal of Empirical Research on Human Research Ethics
2026 |
preprint
Group dynamics shape contagion onsets and multistable active phases under collective reinforcement
S. Lamata-Otín, F. Malizia,
,
, V. Latora, J. Gómez-Gardeñes, and
2026 |
article
Tracking dynamics of superspreading through contacts, exposures, and transmissions in edge-based network epidemics
A. S. Freedman, B. F. Nielsen, M. M. Nguyen,
, and S. A. Levin
Bulletin of Mathematical Biology 88, 127
2026 |
article
Complete asymptotic type-token relationship for growing complex systems with inverse power-law count rankings
P. Rosillo-Rodes,
, and P. S. Dodds
Phys. Rev. Research 8, L012029
2026 |
article
Sensitivity analysis of epidemic forecasting and spreading on networks with probability generating functions
,
, C. Danforth,
, and
J. R. Soc. Interface 23(235), 20250686
2025 |
preprint
Loops, not groups: Long cycles are responsible for discontinuous phase transitions in higher-order network contagions
and
2025 |
preprint
Message passing for epidemiological interventions on networks with loops
,
, and
2025 |
article
Hotspot model shows how location-based superspreading accelerates and reshapes epidemics
B. Wallace, D. T. Dimitrov,
, and A. M. Berdahl
PNAS Nexus 4(9), pgaf299
2025 |
article
One pathogen does not an epidemic make: A review of interacting contagions, diseases, beliefs and stories
, Y.-Y. Ahn, A. Allard, V. Colizza, J. W. Crothers, P. Sheridan Dodds, M. Galesic, F. Ghanbarnejad, D. Gravel, R. A. Hammond, K. Lerman, J. Lovato, J. J. Openshaw, S. Redner, S. V. Scarpino,
, T. R. Tangherlini, and
npj Complex. 2 (26)
2025 |
article
Stochastic diffusion using mean-field limits to approximate master equations
, M. M. Kling,
, S. N. Miller, P. A. Burnham,
, N.J. Gotelli, and B. J. McGill
Royal Society Open Science 12(9), 250726
2025 |
article
Self-reinforcing cascades: A spreading model for beliefs or products of varying intensity or quality
, J. Lovato,
, J. P. Gleeson, S. Redner, and P. L. Krapivsky
Phys. Rev. Lett. 135, 087401
2025 |
preprint
Five misunderstandings in animal social network analysis
D. Redhead, B. Kawam,
, D. Franks, C. S Philson, M. van Duijn, J. Hart, M. B. McElreath, R. McElreath, E. A. Power, C. Ross, S. Sosa, C. Steglich, M. Weiss, and L. J. N. Brent
2025 |
preprint
Defining and classifying models of groups: The social ontology of higher-order networks
, R. Harp,
, T. M. Waring, J. Lovato, and
2025 |
article
Random graphs with specific degree distribution and giant component size
, M. Pósfai, and A. Allard
Phys. Rev. Research 7, L022050
2025 |
article
Characteristic scales and adaptation in higher-order contagions
,
, and
Nat Commun 16, 4589
2025 |
journal
Symmetry-driven embedding of networks in hyperbolic space
,
, and A. Allard
Commun. Phys. 8, 199
2025 |
article
Governance as a complex, networked, democratic, satisfiability problem
,
, J. Lovato,
,
, M.-E. Couture-Ménard, S. Bernatchez, C. Choquette, and A. A. Cohen
npj Complex. 2, 14 (2025).
2025 |
preprint
An Approximate-Master-Equation Formulation of the Watts Threshold Model on Hypergraphs
, K.-I. Goh, and M. A. Porter
2025 |
article
Pandemic monitoring with global aircraft-based wastewater surveillance networks
, J. T. Davis,
, A. Allard, A. Urbinati, S. V. Scarpino, M. Chinazzi, and A. Vespignani
Nat. Med. 31, 788-796
2025 |
article
Adaptive behaviour during epidemics: a social risk appraisal approach to modelling dynamics
D. O'Gara, M. Kasman,
, and R. A. Hammond
J. R. Soc. Interface 22, 20240363
2024 |
journal
Reconstructing networks from simple and complex contagions
,
,
, and
Phys. Rev. E 110, L042301
2024 |
preprint
On the uniform sampling of the configuration model with centrality constraints
F. Thibault,
, and A. Allard
2024 |
article
Network compression with configuration models and the minimum description length
,
, A. Kirkley,
, and A. Allard
Phys. Rev. E 110, 034305
2024 |
preprint
Within-host infection dynamics with master equations and the method of moments: A case study of human papillomavirus in the epithelium
, J. A. Cohen, and
2024 |
article
Innovations through crop switching happen on the diverse margins of US agriculture
M. M. Kling, C. T. Brittain, G. L. Galford, T. M. Waring,
, M. P. Dube, H. Sabzian, N. J. Gotelli, B. J. McGill, and M. T. Niles
Proc. Natl. Acad. Sci. U.S.A. 121, 42
2024 |
journal
The simpliciality of higher-order networks
,
, and N. Eikmeier
EPJ Data Sci. 13, 17
2024 |
article
The response of Canada’s health research ecosystem to the COVID-19 pandemic: a system-level program evaluation
F. Lamontagne, M.-H. Masse, C. Yarnell, F. Camirand-Lemyre, S. Lévesque, M.-P. Domingue, K. O’Hearn, I. Watpool, J. Hoogenes, S. Sprague, J. Ménard, S. Lemaire-Paquette,
, D. Cook, P. Hébert, K. Rowan, N. Yada, K. Menon, R. Fowler, A. Fox-Robichaud, D. Boutin, and J. Marshall M. E. Kho
Can. Med. Assoc. J. 196 (23)
2024 |
article
Diverse misinformation: Impacts of human biases on detection of deepfakes on networks
J. Lovato,
,
, R. Harp, G. Salazar Lopez, S. P. Rogers, I. Ul Haq, and J. Onaolapo
npj Complex. 1 (5)
2024 |
article
The path of complexity
, A. Allard, J. Garland, E. A. Hobson, and L. Zaman
npj Complex. 1 (4)
2024 |
article
Compressing the chronology of a temporal network with graph commutators
, C. Moore, and
Phys. Rev. Lett. 132, 077402
2024 |
journal
Filtering higher-order datasets
, I. Amburg, M. Shi, and S. G. Aksoy
J. Phys. Complex. 5 015006
2024 |
preprint
Invisible Labor in Open Source Software Ecosystems
, A. Casari, K. McLaughlin, and
2024 |
article
Paradoxes in the co-evolution of contagions and institutions
,
,
, T. Waring, and
Proc. R. Soc. Lond. B 291:2028
2024 |
article
Measuring Centralization of Online Platforms Through Size and Interconnection of Communities
,
, and J. Bagrow
Online Social Networks and Media
2024 |
thesis
Probabilistic modeling of disease: Addressing uncertainties in within-host and population-level dynamics
2024 |
thesis
Building a kinder super highway: Online group behavior driven by platform design and social policy
2023 |
article
Nonlinear bias toward complex contagion in uncertain transmission settings
,
, and A. Allard
Proc. Natl. Acad. Sci. U.S.A. 121(1)
2023 |
article
Hypergraph reconstruction from uncertain pairwise observations
,
, and A. Allard
Sci. Rep. 13, 21364
2023 |
article
Network analysis of patterns and relevance of enteric pathogen co-infections among infants in a diarrhea-endemic setting
E. R. Colgate,
, D. M. Dickson, B. Lee, M. J. Wargo, A. Alam, B. D. Kirkpatrick, and
2023 |
article
Temporal and probabilistic comparisons of epidemic interventions
,
,
, A. Allard, and
Bull. Math. Biol. 85, 118.
2023 |
article
Opinion disparity in hypergraphs with community structure
and J. G. Restrepo
Phys. Rev. E 108, 034311
2023 |
article
Operationalizing cultural adaptation to climate change: contemporary examples from United States agriculture
T. Waring, M. Niles, M. Kling, S. Miller,
, H. Sabzian Papi, N. Gotelli, and B. J. McGill
Proc. R. Soc. Lond. B 378:1889
2023 |
article
Accurately summarizing an outbreak using epidemiological models takes time
,
, and
R. Soc. Open Sci. 10, 230634
2023 |
article
Multidisciplinary learning through collective performance favors decentralization
and
Proc. Natl. Acad. Sci. U.S.A. 120, 34
2023 |
preprint
Adaptive hypergraphs and the characteristic scale of higher-order contagions using generalized approximate master equations
,
, and
2023 |
article
Exact and rapid linear clustering of networks with dynamic programming
A. Patania, A. Allard, and
Proc. R. Soc. A 479, 2275
2023 |
proceedings
Evolving Robust Facility Placements
, A. Friedrechsen, N. Cheney, C. Danforth, and P.S. Dodds
Proceedings of the Genetic and Evolutionary Computation Conference
2023 |
proceedings
Neighbor-Hop Mutation for Genetic Algorithm in Influence Maximization
and N. Cheney
Proceedings of the Genetic and Evolutionary Computation Conference
2023 |
article
Compressing network populations with modal networks reveals structural diversity
A. Kirkley, A. Rojas, M. Rosvall, and
Commun. Phys. 6, 148
2023 |
preprint
A blind spot for large language models: Supradiegetic linguistic information
J. W. Zimmerman, D. Hudon, K. Cramer, J. St. Onge, M. Fudolig,
, C. M. Danforth, and P. S. Dodds
2023 |
article
Open access
XGI: A Python package for higher-order interaction networks
, M. Lucas, I. Iacopini, G. Petri, A. C. Schwarze, A. Patania, and L. Torres
JOSS, 8(85), 5162
2023 |
article
The role of directionality, heterogeneity and correlations in epidemic risk and spread
A. Allard, C. Moore, S. V. Scarpino, B. M. Althouse, and
SIAM Rev. 65, 2
2023 |
article
Latent network models to account for noisy, multiply-reported social network data
C. De Bacco, M. Contisciani, J. Cardoso-Silva, H. Safdari, G. L. Borges, D. Baptista, T. Sweet,
, J. Koster, C. T. Ross, R. McElreath, D. Redhead, and E. A. Power
J. R. Stat. Soc. A 186, 355
2023 |
article
Open access
On limitations of uniplex networks for modeling multiplex contagion
and j. adams
PLoS ONE 18(1): e0279345
2023 |
article
Opposing responses to scarcity emerge from functionally unique sociality drivers
A. B. Kao, A. K. Hund, F. P. Santos,
, D. Bhat, J. Garland, R. A. Oomen, and H. F. McCreery
Am. Nat. 202, 3
2023 |
article
Hierarchical team structure and multidimensional localization (or siloing) on networks
,
,
, J. Bagrow, and A. Allard
J. Phys. Complex. 4 035002
2023 |
article
TRACE-Omicron: Policy Counterfactuals to Inform Mitigation of COVID-19 Spread in the United States
D. O’Gara,
,
, R. Purcell, M. Kasman, and R. A. Hammond
Advanced Theory and Simulations
2022 |
article
Open access
Immunity-induced criticality of the genotype network of influenza A (H3N2) hemagglutinin
, C. B. Ogbunugafor, B. M. Althouse, and
PNAS Nexus 1, 4
2022 |
Book review
Open access
Book review: Advances in Network Clustering and Blockmodeling
J. Soc. Struct. 23, 47
2022 |
preprint
The promise of cross-species coexpression analysis in studying the coevolution and ecology of host-symbiont interactions
A. Hund, P. Tiffin,
, and D. Bolnick
2022 |
proceedings
Open access
Limits of individual consent and models of distributed consent in online social networks
J. Lovato, A. Allard, R. Harp, and
FAccT '22: Proceedings of the 2022 ACM Conference on Fairness, Accountability, and Transparency,
2022 |
article
Spatial epidemiology and adaptive targeted sampling to manage the Chagas disease vector Triatoma dimidiata
,
, D. Penados,
, and L. Stevens
PLOS Negl. Trop. Dis. 16, e0010436
2022 |
article
The penumbra of open source: projects outside of centralized platforms are longer maintained, more academic and more collaborative
,
, and J. P. Bagrow
EPJ Data Science
2022 |
proceedings
Cutting through the noise to infer autonomous system topology
K. G. Leyba, J. J. Daymude,
, M. E. J. Newman, J. Rexford, and S. Forrest
INFOCOM 2022, IEEE Conference on Computer Communications, Virtual Conference
2022 |
preprint
Network Onion Divergence: Network representation and comparison using nested configuration models with fixed connectivity, correlation and centrality patterns
,
,
, and A. Allard
2022 |
article
A review & framework for modeling complex engineered system development processes
, J. Austin-Breneman, J. P. Bagrow, and
IEEE Transactions on Systems, Man, and Cybernetics: Systems
2022 |
article
Source-sink cooperation dynamics constrain institutional evolution in a group-structured society
, T. M. Waring,
, M. T. Niles, L. K. Corlew, M. P. Dube, S. J. Miller, and N. Gotelli B. J. McGill
Royal Society Open Science 9, 211743
2022 |
article
Predicting the diversity of early epidemic spread on networks
,
,
, A. Allard, and
Phys. Rev. Res. 4, 013123
2022 |
article
Impact and dynamics of hate and counter speech online
J. Garland, K. Ghazi-Zahedi,
,
, and M. Galesic
EPJ Data Sci. 11, 3
2022 |
article
Clustering of heterogeneous populations of networks
, A. Kirkley, and M. E. J. Newman
Phys. Rev. E 105, 014312
2022 |
article
Flexible environments for hybrid collaboration: redesigning virtual working through the four orders of design
, S. Johnson, and J. Bagrow
Des. Issues 38, 55-69
2022 |
article
How do managers evaluate individual contributions to team production? A theory and empirical test.
J. Uribe, S. Carnahan,
, and J. Austin-Breneman
Strategic Management Journal 43, 12
2022 |
proceedings
The OCEAN mailing list data set: Network analysis spanning mailing lists and code repositories
M. Warrick,
,
, A. Casari,
, and J. Bagrow
2022 IEEE/ACM 19th International Conference on Mining Software Repositories (MSR), Pittsburgh, PA, USA,
2022 |
proceedings
Open access
Distinguishing in-groups and onlookers by language use
J. R. Minot,
,
, G. de Anda Jáuregui, E. Moog, B. P. Samson,
, and A. M. Roth
ACL Workshop Comp. Approaches Subjectivity, Sentiment, Social Media Analysis, Dublin, Ireland
2021 |
article
Open access
Reconstruction of plant–pollinator networks from observational data
, F. S. Valdovinos, and M. E. J. Newman
Nat. Commun. 12, 3911
2021 |
preprint
The network epidemiology of an Ebola epidemic
,
, J. Bedson, L. Skrip, D. Pedi, M. F. Jalloh, B. Raulier, O. Lapointe-Gagné, A. Jambai, A. Allard, and B. M. Althouse
2021 |
article
Adaptive staffing can mitigate essential worker disease and absenteeism in an emerging epidemic
E. Aguilar,
, I. Uralova, P. Mehta,
, and B. D. Zusman
Proc. Natl. Acad. Sci. U.S.A. 118(34)
2021 |
article
Open access
Hypergraph reconstruction from network data
, G. Petri, and T. P. Peixoto
Commun. Phys. 4, 135
2021 |
article
Open access
A clarified typology of core-periphery structure in networks
R. J. Gallagher,
, and B. Foucault Welles
Sci. Adv. 7, abc9800
2021 |
article
Open access
Bayesian inference of network structure from unreliable data
, G. T. Cantwell, and M. E. J. Newman
J. Complex Netw. 8, cnaa046
2021 |
article
Inference, model selection, and the combinatorics of growing trees
G. T. Cantwell,
, and
Phys. Rev. Lett. 126, 038301
2021 |
proceedings
Which contributions count? Analysis of attribution in open source
, A. Casari, K. McLaughlin,
,
, and J. P. Bagrow
2021 IEEE/ACM 17th International Conference on Mining Software Repositories, Madrid, Spain
2021 |
other edited work
Open access
Open source ecosystems need equitable credit across contributions
A. Casari, K. McLaughlin,
,
, J. P. Bagrow, and
Nat. Comput. Sci. 1, 2
2021 |
article
Coordinated support for local action: A modeling study of strategies to facilitate behavior adoption in urban poor communities of Liberia for sustained COVID-19 suppression
L. A. Skrip, M. P. Fallah, J. Bedson,
, and B. M. Althouse
Epidemics, 37
2021 |
article
Open access
Influential groups for seeding and sustaining hypergraph contagions
, I. Iacopini, V. Latora, A. Barrat, G. Petri, A. Allard, and
Commun. Phys. 5, 25
2021 |
article
Universal nonlinear infection kernel from heterogeneous exposure on higher-order networks
, H. Sun, A. Allard,
, and G. Bianconi
Phys. Rev. Lett. 127, 158301
2021 |
article
Masculinity contest cultures and inclusive cultures: insights from an agent-based model of organizational socialization and promotion
,
, J. P. Bagrow, and R. Razzante
Res. Soc. Issues Manag.
2021 |
article
Flowers as dirty doorknobs: Demonstration of a virus transmission mechanism between Apis mellifera and Bombus impatiens
P. Burnham, S. Alger,
, H. Boncristiani,
, and A. Brody
J. Appl. Ecol., 58, 2065
2021 |
proceedings
Open access
When the echo chamber shatters: Examining the use of community-specific language post-subreddit ban
,
, G. de Anda Jáuregui, E. Moog, B. P. Samson,
, and A. M. Roth
ACL Workshop Online Abuse Harms, Madrid, Spain
2021 |
article
A review and agenda for integrated disease models including social and behavioral factors
J. Bedson, L. A. Skrip, D. Pedi, S. Abramowitz, S. Carter, M. F. Jalloh, S. Funk, N. Gobat, T. Giles-Vernick, G. Chowell, J. Rangel de Almeida, R. Elessawi, S. V. Scarpino, R. A. Hammond, S. Briand, J. M. Epstein,
, and B. M. Althouse
Nat. Hum. Behav. 5, 834
2021 |
article
Open access
Seeding COVID-19 across Sub-Saharan Africa: An Analysis of Reported Importation Events across 49 Countries
L. A. Skrip, P. Selvaraj, B. Hagedorn, A. Lin Ouédraogo, N. Noori, A. Orcutt, D. Mistry, J. Bedson,
, S. V. Scarpino, and B. M. Althouse
Am. J. Trop. Med. Hyg. 104, 1694
2021 |
article
Social confinement and mesoscopic localization of epidemics on networks
, V. Thibeault, A. Allard, L. J. Dubé, and
Phys. Rev. Lett. 126, 098301
2021 |
article
Master equation analysis of mesoscopic localization in contagion dynamics on higher-order networks
, V. Thibeault, A. Allard, L. J. Dubé, and
Phys. Rev. E 103, 032301
2021 |
article
The effectiveness of backward contact tracing in networks
S. Kojaku,
, E. Mones, S. Lehmann, and Y.-Y. Ahn
Nat. Phys. 17, 652
2021 |
article
Open access
Localization, epidemic transitions, and unpredictability of multistrain epidemics with an underlying genotype network
,
, and
PLOS Comput. Biol. 17, e1008606
2021 |
article
Open access
Containing future epidemics with trustworthy federated systems for ubiquitous warning and response
D. Carrillo, L. D. Nguyen, P. H. J. Nardelli, E. Pournaras, P. Morita, D. Z. Rodríguez, M. Dzaferagic, H. Siljak, A Jung,
, I. Macaluso, M. Ullah, G. Fraidenraich, and P. Popovski
Front. Comms. Net. 2, 621264
2021 |
other edited work
Halting the spread of COVID-19 and escaping the madness of crowds
In: The Complex Alternative, SFI Press
2020 |
article
The unintended consequences of inconsistent closure policies and mobility restrictions during epidemics
B. M. Althouse, B. Wallace,
, S. V. Scarpino, A. Berdahl, E. R. White, and
2020 |
article
Open access
Networks beyond pairwise interactions: structure and dynamics
F. Battiston, G. Cencetti, I. Iacopini, V. Latora, M. Lucas, A. Patania,
, and G. Petri
Phys. Rep. 874
2020 |
article
Improved mutual information measure for classification and community detection
M. E. J. Newman, G. T. Cantwell, and
Phys. Rev. E 101, 042304
2020 |
article
Macroscopic patterns of interacting contagions are indistinguishable from social reinforcement
, S. V. Scarpino, and
Nat. Phys. 16, 426
2020 |
proceedings
Countering hate on social media: Large scale classification of hate and counter speech
J. Garland, K. Ghazi-Zahedi,
,
, and M. Galesic
ACL, Fourth Workshop on Online Abuse and Harm,
2020 |
proceedings
Connected graphs with a given degree sequence: efficient sampling, correlations, community detection and robustness
J. H. Ring IV,
, and
NetSci-X 2020: Sixth International Winter School and Conference on Network Science, Tokyo, Japan
2020 |
article
Open access
Superspreading events in the transmission dynamics of SARS-CoV-2: opportunities for interventions and control
B. M. Althouse, E. A. Wenger, J. C. Miller, S. V. Scarpino, A. Allard,
, and H. Hu
PLOS Biol. 18, e3000897
2020 |
article
Open access
Modeling the impact of school reopening on SARS-CoV-2 transmission
B. Lee, J. P. Hanley, S. Nowak, J. H. T. Bates, and
BMC Public Health
2020 |
article
Open access
Beyond R0: Heterogeneity in secondary infections and probabilistic epidemic forecasting
, B. M. Althouse, S. V. Scarpino, and A. Allard
J. R. Soc. Interface 17, 172
2020 |
article
Open access
Network comparison and the within-ensemble graph distance
H. Hartle, B. Klein, S. McCabe,
,
, C. Murphy, and
Proc. R. Soc. Lond. A 476, 2243
2020 |
article
Open access
State-level variation of initial COVID-19 dynamics in the United States
E. R. White and
PLOS ONE 15, e0240648
2020 |
article
Open access
Spread of infectious disease and social awareness as parasitic contagions on clustered networks
, D. Mistry, and B. M. Althouse
Phys. Rev. Res. 2, 033306
2020 |
article
Open access
Community Engagement during outbreak response: standards, approaches, and lessons from the Ebola outbreak in Sierra Leone
J. Bedson, M. F. Jalloh, D. Pedi, S. Bah, K. Owen, A. Oniba, M. Sangarie, J. S. Fofanah, M. B. Jalloh, P. Sengeh, L. A. Skrip, B. M. Althouse, and
BMJ Glob. Health 5, e002145
2020 |
article
Open access
Immunization strategies in networks with missing data
, J. A. Smith, G. R. Gauthier, and
PLOS Comput. Biol. 16, e1007897
2020 |
article
Open access
Unmet needs and behaviour during the Ebola response in Sierra Leone: a retrospective, mixed-methods analysis of community feedback from the Social Mobilization Action Consortium
L. A. Skrip, J. Bedson, S. Abramowitz, M. B. Jalloh, S. Bah., M. F. Jalloh, O. Demian Langle-Chimal, N. Cheney,
, and B. M. Althouse
Lancet Planet. Health 4, e74
2020 |
proceedings
Effective implementation of energy aware polarization diversity for IoT networks using eigenvector centrality
S. Chowdhury,
, and J. Frolik
NetSci-X 2020: Sixth International Winter School on Network Science, Tokyo, Japan
2020 |
other edited work
ALIFE 2020: The 2020 Conference on Artificial Life
J. Bongard, J. Lovato,
, R. Dasari, and L. Soros
MIT Press
2020 |
other edited work
Open access
Face aux changements environnementaux, la transdisciplinarité : le cas des cryonoses
S. Crabtree and
Magazine de l'ACFAS
2020 |
other edited work
Open access
La modélisation mathématique pour cartographier le complexe et l’inconnu
A. Allard, L. J. Dubé, and
Magazine de l'ACFAS
2020 |
other edited work
Open access
Misinformation about an outbreak like COVID-19 is important public health data
and V. C. Yang
STAT
2020 |
thesis
On the dynamics and structure of multiple strain epidemic models and genotype networks
2020 |
other edited work
Open access
Dossier bifurcation : conversation éditoriale
and J.-M. Fontan
Magazine de l'ACFAS
2019 |
article
Open access
Phase transition in the recoverability of network history
,
, E. Laurence, C. Murphy,
, and P. Desrosiers
Phys. Rev. X 9, 041056
2019 |
article
Efficient sampling of spreading processes on complex networks using a composition and rejection algorithm
,
,
, and L. J. Dubé
Comput. Phys. Commun. 240, 30
2019 |
preprint
On the accuracy of message-passing approaches to percolation in complex networks
A. Allard and
2019 |
article
Open access
Dynamics of beneficial epidemics
A. Berdahl, C. Brelsford, C. De Bacco, M. Dumas, V. Ferdinand, J. A. Grochow,
, Y. Kallus, C. P. Kempes, A. Kolchinsky, D. B. Larremore, E. Libby, E. A. Power, C. A. Stern, and B. D. Tracey
Sci. Rep. 9, 15093
2019 |
article
Open access
Smeared phase transitions in percolation on real complex networks
and A. Allard
Phys. Rev. Res. 1, 013009
2019 |
article
Open access
Syntrophy emerges spontaneously in complex metabolic systems
E. Libby,
, and S.-R. Hosseini A. Wagner
PLOS Comput. Biol. 15, e1007169
2019 |
article
Open access
Percolation and the effective structure of complex networks
A. Allard and
Phys. Rev. X 9, 011023
2019 |
article
The symptoms at the center: Examining the comorbidity of posttraumatic stress dDisorder, generalized anxiety disorder, and depression with network analysis
M. Price, A. C. Legrand, Z. M. F. Brier, and
J. Psychiatr. Res. 109, 52
2018 |
article
Universality of the stochastic block model
,
, P. Desrosiers, and L. J. Dubé
Phys. Rev. E 98, 032309
2018 |
article
Exact analytical solution of irreversible binary dynamics on networks
E. Laurence,
, S. Melnik, and L. J. Dubé
Phys. Rev. E 97, 032302
2018 |
article
Phase transition of the susceptible-infected-susceptible dynamics on time-varying configuration model networks
,
, E. Laurence, C. Murphy, and L. J. Dubé
Phys. Rev. E 97, 022305
2018 |
article
Open access
Edge fires drive the shape and stability of tropical forests
, A. F. A. Pellegrini, U. Bhat, S. Redner, and S. W. Pacala A. Berdahl
Ecol. Lett. 21, 794
2017 |
article
Construction of and efficient sampling from the simplicial configuration model
, G. Petri, F. Vaccarino, and A. Patania
Phys. Rev. E 96, 032312
2017 |
article
Open access
Strategic tradeoffs in competitor dynamics on adaptive networks
, A. Allard, P.-A. Noël,
, and E. Libby
Sci. Rep. 7, 7576
2017 |
article
Finite size analysis of the detectability limit of the stochastic block model
, P. Desrosiers,
, E. Laurence, and L. J. Dubé
Phys. Rev. E 95, 062304
2017 |
article
Open access
The risk of sustained sexual transmission of Zika is underestimated
A. Allard, B. M. Althouse,
, and S. V. Scarpino
PLoS Pathog 13, e1006633
2017 |
article
Open access
Asymmetric percolation drives a double transition in sexual contact networks
A. Allard, B. M. Althouse, S. V. Scarpino, and
Proc. Natl. Acad. Sci. U.S.A. 114, 34
2017 |
article
Exotic phase transitions of k-cores in clustered networks
U. Bhat, M. Shrestha, and
Phys. Rev. E 95, 012314
2016 |
article
Growing networks of overlapping communities with internal structure
,
, A. Allard, and L. J. Dubé
Phys. Rev. E 94, 022317
Editor's pick
2016 |
article
Constrained growth of complex scale-independent systems
, A. Allard,
, and L. J. Dubé
Phys. Rev. E 93, 032304
2016 |
article
Open access
Network structure at multiple scales via a new network statistic: the onion decomposition
and J. A. Grochow A. Allard
Sci. Rep. 6, 31708
2016 |
article
The effect of a prudent adaptive behaviour on disease transmission
S. V. Scarpino, A. Allard, and
Nat. Phys. 12, 1042
2015 |
article
Complex networks as an emerging property of hierarchical preferential attachment
, E. Laurence, A. Allard,
, and L. J. Dubé
Phys. Rev. E 92, 062809
2015 |
article
General and exact approach to percolation on random graphs
A. Allard,
,
, and L. J. Dubé
Phys. Rev. E 92, 062807
2015 |
article
Open access
A shadowing problem in the detection of overlapping communities: lifting the resolution limit through a cascading procedure
, A. Allard,
, and L. J. Dubé
PLOS ONE 10, e0140133
2015 |
article
Open access
Enhancing disease surveillance with novel data streams: challenges and opportunities
B. M. Althouse, S. V. Scarpino, L. Ancel Meyers, J. W. Ayers, M. Bargsten, J. Baumbach, J. S. Brownstein, L. Castro, H. Clapham, D. A. T. Cummings, S. Del Valle, S. Eubank, G. Fairchild, L. Finelli, N. Generous, D George, D. R. Harper,
, M. A. Johansson, K. Konty, M. Lipsitch, G. Milinovich, J. D. Miller, E. O. Nsoesie, D. R. Olson, M. Paul, P. M. Polgreen, R. Priedhorsky, J. M. Read, I. Rodríguez-Barraquer, D. J. Smith, C. Stefansen, D. L. Swerdlow, D. Thompson, and A. Vespignani A. Wesolowski
EPJ Data Sci. 4, 17
2015 |
article
Open access
Complex dynamics of synergistic coinfections on realistically clustered networks
and B. M. Althouse
Proc. Natl. Acad. Sci. U.S.A. 112, 33
Editor's pick
2014 |
article
Coexistence of phases and the observability of random graphs
A. Allard,
,
, and L. J. Dubé
Phys. Rev. E 89, 022801
2014 |
article
Open access
Spreading dynamics on complex networks: a general stochastic approach
P.-A. Noël, A. Allard,
, and V. Marceau L. J. Dubé
J Math Biol 69, 1627
2014 |
article
Open access
Epidemic Cycles Driven by Host Behavior
B. M. Althouse and
J. R. Soc. Interface 11, 20140575
2014 |
other edited work
The Social Zombie: Modelling undead outbreaks on social networks
, V. Marceau, P.-A. Noël, A. Allard, and L. J. Dubé
In: Mathematical Modelling of Zombies, University of Ottawa Press
2013 |
article
Percolation on random networks with arbitrary k-core structure
, A. Allard,
, and L. J. Dubé
Phys. Rev. E 88, 062820
2013 |
article
Open access
Global efficiency of local immunization on complex networks
, A. Allard,
, and L. J. Dubé
Sci. Rep. 3, 2171
2013 |
article
Open access
Optimizing treatment regimes to hinder antiviral resistance in influenza across time scales
O. Patterson-Lomba, B. M. Althouse, G. M. Goerg, and
PLOS ONE 8, e59529
2013 |
article
Pathogen mutation modeled by competition between site and bond percolation
, O. Patterson-Lomba, and G. M. Goerg B. M. Althouse
Phys. Rev. Lett. 110, 108103
2013 |
article
Open access
Targeting and timing of treatment influences the emergence of influenza resistance in structured populations
B. M. Althouse, O. Patterson-Lomba, G. M. Goerg, and
PLOS Comput. Biol. 9, e1002912
2012 |
article
Bond percolation on a class of correlated and clustered random graphs
A. Allard,
, P.-A. Noël, and V. Marceau L. J. Dubé
J. Phys. A: Math. Theor. 45405005
2012 |
article
Exact solution of bond percolation on small arbitrary graphs
A. Allard,
, P.-A. Noël, and V. Marceau L. J. Dubé
EPL 98, 16001
2012 |
article
Propagation on networks: an exact alternative perspective
P.-A. Noël, A. Allard,
, and V. Marceau L. J. Dubé
Phys. Rev. E 85, 031118
2012 |
article
Structural preferential attachment: Stochastic process for the growth of scale-free, modular and self-similar systems
, A. Allard, V. Marceau, P.-A. Noël, and L. J. Dubé
Phys. Rev. E 85, 026108
2011 |
article
Structural Preferential Attachment: Network organization beyond the link
, A. Allard, V. Marceau, P.-A. Noël, and L. J. Dubé
Phys. Rev. Lett. 107, 158702
2011 |
article
Modeling the dynamical interaction between epidemics on overlay networks
V. Marceau, P.-A. Noël,
, A. Allard, and L. J. Dubé
Phys. Rev. E 84, 026105
2010 |
article
Adaptive networks: Coevolution of disease and topology
V. Marceau, P.-A. Noël,
, A. Allard, and L. J. Dubé
Phys. Rev. E 82, 036116